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Journal of Biomedical Discovery and Collaboration

Articles

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  1. Content type: Research

    Biomedical scientists need to access figures to validate research facts and to formulate or to test novel research hypotheses. However, figures are difficult to comprehend without associated text (e.g., figure...

    Authors: Hong Yu, Shashank Agarwal, Mark Johnston and Aaron Cohen

    Citation: Journal of Biomedical Discovery and Collaboration 2009 4:1

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  2. Content type: Research

    The term blue skies research implies a freedom to carry out flexible, curiosity-driven research that leads to outcomes not envisaged at the outset. This research often challenges accepted thinking and introduc...

    Authors: Belinda Linden

    Citation: Journal of Biomedical Discovery and Collaboration 2008 3:3

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  3. Content type: Software

    PubMed is designed to provide rapid, comprehensive retrieval of papers that discuss a given topic. However, because PubMed does not organize the search output further, it is difficult for users to grasp an ove...

    Authors: Neil R Smalheiser, Wei Zhou and Vetle I Torvik

    Citation: Journal of Biomedical Discovery and Collaboration 2008 3:2

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  4. Content type: Software

    Improved evaluation methodologies have been identified as a necessary prerequisite to the improvement of text mining theory and practice. This paper presents a publicly available framework that facilitates tho...

    Authors: William A Baumgartner Jr, K Bretonnel Cohen and Lawrence Hunter

    Citation: Journal of Biomedical Discovery and Collaboration 2008 3:1

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  5. Content type: Case Study

    Biological organisms and their components are better conceived within categories based on similarity rather than on identity. Biologists routinely operate with similarity-based concepts such as "model organism...

    Authors: Celeste Michelle Condit and L Bruce Railsback

    Citation: Journal of Biomedical Discovery and Collaboration 2007 2:5

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  6. Content type: Research

    Most biomedical corpora have not been used outside of the lab that created them, despite the fact that the availability of the gold-standard evaluation data that they provide is one of the rate-limiting factor...

    Authors: Helen L Johnson, William A Baumgartner Jr, Martin Krallinger, K Bretonnel Cohen and Lawrence Hunter

    Citation: Journal of Biomedical Discovery and Collaboration 2007 2:4

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  7. Content type: Research

    Collaborative efforts of physicians and basic scientists are often necessary in the investigation of complex disorders. Difficulties can arise, however, when large amounts of information need to reviewed. Adva...

    Authors: Kristina M Hettne, Marissa de Mos, Anke GJ de Bruijn, Marc Weeber, Scott Boyer, Erik M van Mulligen, Montserrat Cases, Jordi Mestres and Johan van der Lei

    Citation: Journal of Biomedical Discovery and Collaboration 2007 2:2

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  8. Content type: Focus

    Data management and integration are complicated and ongoing problems that will require commitment of resources and expertise from the various biological science communities. Primary components of successful cr...

    Authors: P Bryan Heidorn, Carole L Palmer and Dan Wright

    Citation: Journal of Biomedical Discovery and Collaboration 2007 2:1

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  9. Content type: Software

    Annotation of proteins with gene ontology (GO) terms is ongoing work and a complex task. Manual GO annotation is precise and precious, but it is time-consuming. Therefore, instead of curated annotations most o...

    Authors: Francisco M Couto, Mário J Silva, Vivian Lee, Emily Dimmer, Evelyn Camon, Rolf Apweiler, Harald Kirsch and Dietrich Rebholz-Schuhmann

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:19

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  10. Content type: Focus

    Understanding how humans differ from other animals, as well as how we are like them, requires comparative investigations. For the purpose of documenting the distinctive features of humans, the most informative...

    Authors: Todd M Preuss

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:17

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  11. Content type: Focus

    Scientific and popular lore have promulgated a connection between emotion and the limbic forebrain. However, there are a variety of structures that are considered limbic, and disagreement as to what is meant b...

    Authors: Karl H Pribram

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:14

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  12. Content type: Editorial

    One of the most pressing and timely scientific questions concerns the evolution of man. In 1970, Karl Pribram delivered the James Arthur Lecture at the American Museum of Natural History in New York City. His ...

    Authors: Neil R Smalheiser

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:12

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  13. Content type: Case Study

    The network model of innovation widely adopted among researchers in the economics of science and technology posits relatively porous boundaries between firms and academic research programs and a bi-directional...

    Authors: Tim Lenoir and Eric Giannella

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:11

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  14. Content type: Software

    Knowledge bases that summarize the published literature provide useful online references for specific areas of systems-level biology that are not otherwise supported by large-scale databases. In the field of n...

    Authors: Gully APC Burns and Wei-Cheng Cheng

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:10

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  15. Content type: Case Study

    The Center for Behavioral Neuroscience was launched in the fall of 1999 with support from the National Science Foundation, the Georgia Research Alliance, and our eight participating institutions (Georgia State...

    Authors: Kelly R Powell and H Elliott Albers

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:9

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  16. Content type: Case Study

    Polymerase chain reaction (PCR) was a seminal genomic technology discovered, developed, and patented in an industry setting. Since the first of its core patents expired in March, 2005, we are in a position to ...

    Authors: Joe Fore Jr, Ilse R Wiechers and Robert Cook-Deegan

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:7

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  17. Content type: Research

    Arrowsmith is a unique computer-assisted strategy designed to assist investigators in detecting biologically-relevant connections between two disparate sets of articles in Medline. This paper describes how an ...

    Authors: Neil R Smalheiser, Vetle I Torvik, Amanda Bischoff-Grethe, Lauren B Burhans, Michael Gabriel, Ramin Homayouni, Alireza Kashef, Maryann E Martone, Guy A Perkins, Diana L Price, Andrew C Talk and Ruth West

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:8

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  18. Content type: Research

    The hypothesis that distance matters but that in recent years geographical proximity has become less important for research collaboration was tested. We have chosen a sample–authors at German immunological ins...

    Authors: Frank Havemann, Michael Heinz and Hildrun Kretschmer

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:6

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  19. Content type: Focus

    Occasionally, multiple names are given to the same gene/protein. When this happens, different names can be used in subsequent publications, for example in different research areas, sometimes with little or no ...

    Authors: Hari Manev and Radmila Manev

    Citation: Journal of Biomedical Discovery and Collaboration 2006 1:5

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