|
Contextualizing
|
Expression values from one's own experimental data as cues about regulatory processes and paths
| ✓ |
Yes, but not found
|
| |
Indirect relationships and paths between proteins in networks of interactions
| ✓ |
Required time-consuming filtering
|
| |
Functional pathways related to sets of interactions
| ✓ |
SAGA, but not inter-active; or side by side
|
| |
Homology or pathway comparisons between species to see if molecules or interactions are conserved
| ✓ |
Yes
|
| |
Ability to filter by multiple variables at once or to filter to only the shared interactors between specified genes
|
No
|
No; strings in a field
|
| |
Test statistics
|
No
|
No
|
|
Detail
|
Types of interactions: Physical binding, activation/inhibition, family member interactions, transcription/expression, translocation/secretion, phosphorylation
|
Partly
|
Buried in NLP free text; incomplete knowledge
|
| |
Types of molecules: Distinctions between genes, proteins, chemical effectors DNA, mRNA, protein complexes, mRNA, enzyme
|
Partly
|
Incomplete knowledge
|
| |
Experiment type
| ✓ |
Strings in a field
|
| |
Ability to color code by attributes
| ✓ |
Time consuming
|
