The TREC 2004 genomics track categorization task: classifying full text biomedical documents

Cohen, Aaron M; Hersh, William R

doi:10.1186/1747-5333-1-4

Journal of Biomedical Discovery and Collaboration

Table 6 Triage subtask runs, sorted by utility.

From: The TREC 2004 genomics track categorization task: classifying full text biomedical documents

Run	Group (reference)	Precision	Recall	F-score	Utility
dimacsTfl9d	rutgers.dayanik [3]	0.1579	0.8881	0.2681	0.6512
dimacsTl9mhg	rutgers.dayanik [3]	0.1514	0.8952	0.259	0.6443
dimacsTfl9w	rutgers.dayanik [3]	0.1553	0.8833	0.2642	0.6431
dimacsTl9md	rutgers.dayanik [3]	0.173	0.7952	0.2841	0.6051
pllsgen4t3	patolis.fujita [4]	0.149	0.769	0.2496	0.5494
pllsgen4t4	patolis.fujita [4]	0.1259	0.831	0.2186	0.5424
pllsgen4t2	patolis.fujita [4]	0.1618	0.7238	0.2645	0.5363
pllsgen4t5	patolis.fujita [4]	0.174	0.6976	0.2785	0.532
pllsgen4t1	patolis.fujita [4]	0.1694	0.7024	0.273	0.5302
GUCwdply2000	german.u.cairo [11]	0.151	0.719	0.2496	0.5169
KoikeyaTri1	u.tokyo (none)	0.0938	0.9643	0.171	0.4986
OHSUVP	ohsu.hersh [5]	0.1714	0.6571	0.2719	0.4983
KoikeyaTri3	u.tokyo (none)	0.0955	0.9452	0.1734	0.4974
KoikeyaTri2	u.tokyo (none)	0.0913	0.9738	0.167	0.4893
NLMT2SVM	nlm.umd.ul [12]	0.1286	0.7333	0.2188	0.4849
dimacsTl9w	rutgers.dayanik [3]	0.1456	0.6643	0.2389	0.4694
nusbird2004c	mlg.nus [13]	0.1731	0.5833	0.267	0.444
lgct1	indiana.u.seki [7]	0.1118	0.7214	0.1935	0.4348
OHSUNBAYES	ohsu.hersh [5]	0.129	0.6548	0.2155	0.4337
NLMT2BAYES	nlm.umd.ul [12]	0.0902	0.869	0.1635	0.4308
THIRcat04	tsinghua.ma [14]	0.0908	0.7881	0.1628	0.3935
GUClin1700	german.u.cairo [11]	0.1382	0.5595	0.2217	0.3851
NLMT22	nlm.umd.ul [12]	0.1986	0.481	0.2811	0.3839
NTU2v3N1	ntu.chen [15]	0.1003	0.6905	0.1752	0.381
NLMT21	nlm.umd.ul [12]	0.195	0.4643	0.2746	0.3685
GUCply1700	german.u.cairo [11]	0.1324	0.5357	0.2123	0.3601
NTU3v3N1	ntu.chen [15]	0.0953	0.6857	0.1673	0.3601
NLMT2ADA	nlm.umd.ul [12]	0.0713	0.9881	0.133	0.3448
lgct2	indiana.u.seki [7]	0.1086	0.581	0.183	0.3426
GUClin1260	german.u.cairo [11]	0.1563	0.469	0.2345	0.3425
THIRcat01	tsinghua.ma [14]	0.1021	0.6024	0.1746	0.3375
NTU4v3N1416	ntu.chen [15]	0.0948	0.6357	0.165	0.3323
THIRcat02	tsinghua.ma [14]	0.1033	0.5571	0.1743	0.3154
biotext1trge	u.cberkeley.hearst [16]	0.0831	0.7	0.1486	0.3139
GUCply1260	german.u.cairo [11]	0.1444	0.4333	0.2167	0.305
OHSUSVMJ20	ohsu.hersh [5]	0.2309	0.3524	0.279	0.2937
biotext2trge	u.cberkeley.hearst [16]	0.095	0.5548	0.1622	0.2905
THIRcat03	tsinghua.ma [14]	0.0914	0.55	0.1567	0.2765
THIRcat05	tsinghua.ma [14]	0.1082	0.4167	0.1718	0.245
biotext3trge	u.cberkeley.hearst [16]	0.1096	0.4024	0.1723	0.2389
nusbird2004a	mlg.nus [13]	0.1373	0.3357	0.1949	0.2302
nusbird2004d	mlg.nus [13]	0.1349	0.2881	0.1838	0.1957
nusbird2004b	mlg.nus [13]	0.1163	0.3	0.1677	0.1861
eres2	u.edinburgh.sinclair [17]	0.1647	0.231	0.1923	0.1724
biotext4trge	u.cberkeley.hearst [16]	0.1271	0.2571	0.1701	0.1688
emet2	u.edinburgh.sinclair [17]	0.1847	0.2071	0.1953	0.1614
epub2	u.edinburgh.sinclair [17]	0.1729	0.2095	0.1895	0.1594
nusbird2004e	mlg.nus [13]	0.136	0.231	0.1712	0.1576
geneteam3	u.hospital.geneva [18]	0.1829	0.1833	0.1831	0.1424
edis2	u.edinburgh.sinclair [17]	0.1602	0.1857	0.172	0.137
wdtriage1	indiana.u.yang [19]	0.202	0.1476	0.1706	0.1185
eint2	u.edinburgh.sinclair [17]	0.1538	0.1619	0.1578	0.1174
NTU3v3N1c2	ntu.chen [15]	0.1553	0.1357	0.1449	0.0988
geneteam1	u.hospital.geneva [18]	0.1333	0.1333	0.1333	0.09
geneteam2	u.hospital.geneva [18]	0.1333	0.1333	0.1333	0.09
biotext5trge	u.cberkeley.hearst [16]	0.1192	0.1214	0.1203	0.0765
TRICSUSM	u.sanmarcos [20]	0.0792	0.1762	0.1093	0.0738
IBMIRLver1	ibm.india (none)	0.2053	0.0738	0.1086	0.0595
EMCTNOT1	tno.kraaij [21]	0.2	0.0143	0.0267	0.0114
Mean		0.1381	0.5194	0.1946	0.3303
MeSH Mice	rutgers.dayanik [3]	0.1502	0.8929	0.2572	0.6404

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