The TREC 2004 genomics track categorization task: classifying full text biomedical documents

Cohen, Aaron M; Hersh, William R

doi:10.1186/1747-5333-1-4

Journal of Biomedical Discovery and Collaboration

Table 7 Annotation hierarchy subtask, sorted by F-score.

From: The TREC 2004 genomics track categorization task: classifying full text biomedical documents

Run	Group (reference)	Precision	Recall	F-score
lgcad1	indiana.u.seki [7]	0.4415	0.7697	0.5611
lgcad2	indiana.u.seki [7]	0.4275	0.7859	0.5537
wiscWRT	u.wisconsin [8]	0.4386	0.6202	0.5138
wiscWT	u.wisconsin [8]	0.4218	0.6263	0.5041
dimacsAg3mh	rutgers.dayanik [3]	0.5344	0.4545	0.4913
NLMA1	nlm.umd.ul [12]	0.4306	0.5515	0.4836
wiscWR	u.wisconsin [8]	0.4255	0.5596	0.4834
NLMA2	nlm.umd.ul [12]	0.427	0.5374	0.4758
wiscW	u.wisconsin [8]	0.3935	0.5596	0.4621
KoikeyaHi1	u.tokyo (none)	0.3178	0.7293	0.4427
iowarun3	u.iowa [22]	0.3207	0.6	0.418
iowarun1	u.iowa [22]	0.3371	0.5434	0.4161
iowarun2	u.iowa [22]	0.3812	0.4505	0.413
BIOTEXT22	u.cberkeley.hearst [16]	0.2708	0.796	0.4041
BIOTEXT21	u.cberkeley.hearst [16]	0.2658	0.8141	0.4008
dimacsAl3w	rutgers.dayanik [3]	0.5015	0.3273	0.3961
GUCsvm0	german.u.cairo [11]	0.2372	0.7414	0.3595
GUCir50	german.u.cairo [11]	0.2303	0.8081	0.3584
geneteamA5	u.hospital.geneva [18]	0.2274	0.7859	0.3527
GUCir30	german.u.cairo [11]	0.2212	0.8404	0.3502
geneteamA4	u.hospital.geneva [18]	0.209	0.9354	0.3417
BIOTEXT24	u.cberkeley.hearst [16]	0.4452	0.2707	0.3367
GUCsvm5	german.u.cairo [11]	0.2052	0.9354	0.3366
cuhkrun3	chinese.u.hongkong (none)	0.4174	0.2808	0.3357
geneteamA2	u.hospital.geneva [18]	0.2025	0.9535	0.334
dimacsAabsw1	rutgers.dayanik [3]	0.5979	0.2283	0.3304
BIOTEXT23	u.cberkeley.hearst [16]	0.4437	0.2626	0.3299
geneteamA1	u.hospital.geneva [18]	0.1948	0.9778	0.3248
geneteamA3	u.hospital.geneva [18]	0.1938	0.9798	0.3235
GUCbase	german.u.cairo [11]	0.1881	1	0.3167
BIOTEXT25	u.cberkeley.hearst [16]	0.4181	0.2525	0.3149
cuhkrun2	chinese.u.hongkong (none)	0.4385	0.2303	0.302
cuhkrun1	chinese.u.hongkong (none)	0.4431	0.2283	0.3013
dimacsAp5w5	rutgers.dayanik [3]	0.5424	0.1939	0.2857
dimacsAw20w5	rutgers.dayanik [3]	0.6014	0.1677	0.2622
iowarun4	u.iowa [22]	0.1692	0.1333	0.1492
Mean		0.3600	0.5814	0.3824

Back to article page